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Web resources of chlamydial interest
Please note:
www.chlamydiae.com
has no control of the changing content of sites to which it links. The existence
of a link from this site does not imply endorsement of that site. This page
being updated Jan 2008.
Chlamydial Genomics and proteomics
Stanford /
Berkely Chlamydia genomics project C. trachomatis D & L2; C. pneumoniae
CWL 029 [C. trachomatis serovar D was the first
chlamydial genomic sequence in a project shared between Berkeley (Richard
Stephen's group) and Stanford (Ron Davies group). The original Berkeley site has
disappeared and this site was last updated in 1999 and has been surpassed by
other genomics sites. However this was an historic collaboration, making high quality genomic data available to the
research community as it happened. Anybody who provides quality whole genome
sequence data for the very first time deserves 3 star rating]. Accessed 2/1/2008 
Chlamydia trachomatis serovar A. Sanger Institute 1.052Mb; C. trachomatis
Serovar B [Latest sequences.
Databases available but finishing still in progress, publication pending].
Accessed 2/1/2008
Chlamydia
trachomatis Jali (Gambia) Serovar B 1.04 Mb [Latest
sequences. Database available but finishing still in progress, publication
pending]. Accessed 2/1/2008
Chlamydia trachomatis serovar L2 1.038 MB [Latest
sequences. Database available but finishing and gene prediction still in
progress, publication pending] Accessed
2/1/2008
C. muridarum (Nigg strain)
Accessed 2/1/2008
Chlamydophila
abortus genome S26/3 Wellcome Trust Sanger Institute and Moredun
Institute.
Associated publication [961 predicted coding
sequences, 842 conserved in other Chlamydophila; no toxin genes; no genes for
tryptophan metabolism or nucleotide salvage]. Accessed 2/1/2008
Chlamydophila caviae (former GPIC strain)
[Posted by TIGR 5/8/2003]
Chlamydophila felis genome
strain Fe/C-56
[Sequenced at Kitasato University Japan a long time ago
but not completely annotated. Available via Genbank FTP at link given].
Accessed 2/1/2008
Chlamydophila pneumoniae AR39 TIGR
Accessed 2/1/2008
Chlamydophila pneumoniae CWL029 Berkeley & Stanford
Accessed 2/1/2008
Chlamydophila
pneumoniae
genome J138: Yamaguchi and Kyushu
Universities, Japan Also
Genbank Accessed 2/1/2008
Environmental
Chlamydia genome
project, Technical University of Munich and the University of Vienna. [Mathias
Horn's group provided the first genomic sequence for an environmental
chlamydiales species, Protochlamydia
amoebophila
UWE25]. Accessed 2/1/2008
Simkania negevensis Z genome. Being sequenced by TIGR. Sequence data
still incomplete at 2/1/2008
STD Genome database
also at NMPDR [Funding
of the excellent STDGEN NIAID/NIH website finished in 2004. A real pity because
there were excellent tools available. Limited functionality still available at
the alternate link provided]. Accessed 2/1/2008
EMBL Bioinformatics proteomics
database [Select appropriate database from left
hand frame] Accessed 2/1/2008
Chlamydial proteomics database
University of Aarhus, Denmark [Includes 2D PAGE database of C.
pneumoniae VR1310 proteome and IFN-gamma induced HeLa cell proteins]
Accessed 2/1/2008
[MEW] January 2008
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