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Evolution section: references cited (beginning, A to K)

Akman, L., and S. Aksoy, (2001). A novel application of gene arrays: Escherichia coli arrays provides insight into the biology of the obligate endosymbiont of tsetse flies. Proc. Nat. Acad. Sci. U. S. A. 98, 7546 - 7551. Full article [Acrobat]

Akman, L., et al., (2001). Genome size and coding capacity of Soldalis glossinidius, an enteric symbiont of tsetse flies, as revealed by hybridization to Escherichia coli gene arrays. J. Bacteriol. 183, 4517 - 4525.  

Aim, R. A., et al., (1999). Genomic sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397, 176 - 180.

Amman, R., et al., (1997). Obligate intracellular bacterial parasites of Acanthamoebae related to Chlamydia spp. Appl. Environ. Microbiol. 63, 115 - 121. Full article [Acrobat]

Andersson, S. G. E., (1998). Bioenergetics of the obligate intracellular parasite Rickettsia prowazekii. Biochim. Biophys. Acta 1365, 105 - 111.

Andersson, S. G. E, et al., (1998). The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature 396, 133 - 140.

Andersson, S. G. E., and C. G. Kuriand, (1998). Reductive evolution of resident genomes. Trends in Microbiol. 6, 263 - 268. Full article (Biomednet)

Andersson, S.G. E., et al., (1999). Molecular phylogeny and rearrangement of rRNA genes in Rickettsia species. Mol. Biol. Evol. 16, 985 - 985. Full article [Acrobat]

Andersson, J. O., and S. G. E. Andersson, (1997). Genomic rearrangements during evolution of the obligate intracellular parasite Rickettsia prowazekii as inferred from an analysis of 52015 bp by nucleotide sequence. Microbiology 143, 2783 - 2795. Full article [Acrobat]

Andersson, J. O., and S. G. E. Andersson, (1999). Genome degradation is an ongoing process in Rickettsia. Mol. Biol. Evol. 16, 1178 - 1191. Full article [Acrobat]

Andersson, J. O., and S. G. E. Andersson, (1999). Insights into the evolutionary process of genome degradation. Curr. Opinion Gen. Develop. 9, 664 - 671. Full article (Biomednet)

Andersson, J. O., and S. G. E. Andersson, (2000). A century of typhus, lice and Rickettsia. Res Microbiol. 151, 143 - 150. Full article [Acrobat]

Andersson, J. O., and S. G. E. Andersson, (2001). Pseudogenes, junk DNA and the dynamics of rickettsia genomes. Mol. Biol. Evol. 18, 829 - 839.

Barbour, A. G., et al., (1982). Chlamydia trachomatis has penicillin-binding proteins but not detectable muramic acid. J. Bacteriol. 151, 420 - 428.

Bavoil, P. M., R.-C. Hsia, and D. M. Ojcius, (2000). Closing in on Chlamydia and its bag of tricks. Microbiology 146, 2723 - 2731. Full article [Acrobat]

Beatty, W. L., R. P. Morrison, and G. I. Byrne, (1994). Persistent chlamydiae: from cell culture to a paradigm for chlamydial pathogenesis. Microbiol. Rev. 58, 686 - 699.

Bell, G., (1997). The basics of selection. Chapman and Hall, New York, NY

Belland, R. I, et al., (2001). Chlamydia trachomatis cytotoxicity associated with complete and partial cytotoxicity genes. Proc. Nat. Acad. Sci. U. S. A. 98, 13984 - 13989. Full article [Acrobat]

Bender, L., et al., (1990). Genome analysis of Legionella spp. by orthogonal field alternation gel electrophoresis (OFAGE). FEMS Microbiol. Letters 60, 253 - 257.

Benton, M. J., (1997). Vertebrate palaeontology. Second edition. Chapman and Hall, London.

Birtles, R. J. et al., (1997). Chlamydia-like obligate parasite of free-living amoebae. Lancet 349, 925 - 926.

Blattner, F. R., et al., (1997). The complete genome sequence of Escherichia coli K - 12. Science 277,1453 - 1462.

Blocker, K. et al., (2001). Structure and composition of the Shigella flexneri "needle complex", a part of its Type Ill secretion. Mol. Microbiol. 39, 652 - 653.

Boleti, H. et al., (1999). Chlamydia infection of epithelial cells expressing dynamin and Eps15 mutants: clathrin-independent entry into cells and dynamin-dependent productive growth. J. Cell Sci. 112, 1487 - 1496. Full article [Acrobat]

Bonner, J. T., (2000). First signals. The evolution of multicellular development. Princeton University Press, Princeton, NJ.

Boorstein, W. R., T. Ziegelhoffer, and E. A. Craig, (1994). Molecular evolution of the HSP70 multigene family. J. Mol. Evol. 38, 1 - 17.

Brinkman, F. S., Blanchard, J. L., Cherkasov, A., Av-Gay, Y., Brunham, R. C., Fernandez, R. C. et al., (2002). Evidence that plant-like genes in Chlamydia species reflect an ancestral relationship between Chlamydiaceae, cyanobacteria, and the chloroplast. Genome Research 12, 1159 - 1167.

Brunham, R. C., (1999). Human immunity to chlamydiae. p. 211-238. In R. S. Stephens, Editor. Chlamydia. Intracellular biology, pathogenesis, and immunity. ASM Press, Washington D. C.

Brade, H. et al., (1997). Chlamydial lipopolysaccharide. J. Endotoxin Res. 4, 67 - 84

Bramhill, D., (1997). Bacterial cell division. Annu. Rev. Cell. Develop. Biol. 13, 395 - 424. Full article [Acrobat]

Bult, C. I. et al., (1996). Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschi. Science 273, 1058 - 1073.

Bush, R. M., and K. D. E. Everett, (2001). Molecular evolution of the Chlamydiaceae. Int. J. Syst. Evol. Bacteriol. 51, 203 - 220.

Byrne, G. I. et al., (2001). Chlamydia pneumoniae expresses genes required for DNA replication but not cytokinesis during persistent infection of HEp-2 cells. Infect. Immun. 69, 5423 - 5429.  

Brown I, and D. D. Rockey, (2000). Identification of an antigen localized to an apparent septum within dividing chlamydiae. Infect. Immun. 68, 708 - 715. Full article [Acrobat]

Chamboud, L. et al., (2001). The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis. Nucleic Acids Res. 29, 2145 - 2153.

Chang, J.-J., K. R. Leonard, and Y.-X Zhang, (1997). Structural studies of the surface projections of Chlamydia trachomatis by electron microscopy. J. Med. Microbiol. 46, 1013 - 1018.

Cheng, L. W., and 0. Schneewind, (2000). Type Ill machines of gram-negative bacteria: delivering the goods. Trends in Microbiol. 8, 214 - 220. Full article (Biomednet)

Chiang, S. L., J. J. Mekalanos, and D. W. Hoiden, (1999). In vivo genetic analysis of bacterial virulence. Annu. Rev. Microbiol. 53, 129 - 154.

Chopra, L, et al., (1998). Antibiotics, peptidoglycan synthesis and genomics: the chlamydial anomaly revisited. Microbiology 144, 2673 - 2678. Full article  [Acrobat]

Cole, S. T., et al., (1998). Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393, 537 - 544.

Cole, S. T., et al., (2001). Massive gene decay in the leprosy bacillus. Nature 409, 1007 - 1011.

Colon, J. L., (1960). Enzymes for formation of citrovorum factor in members of the psittacosis group of microorganisms. J. Bacteriol. 79, 744 - 746.

Colon, J. L, and J. W. Moulder., (1958). Folic acid in purified preparations of members of the psittacosis group of microorganisms. J. Infect. Dis. 103, 109 - 119.

Cornelis, G. R., and F. Van Gijsegem, (2000). Assembly and function of Type Ill secretion systems. Annu. Rev. Microbiol. 54, 735 - 774.

Corsaro, D. et al., (1999). Intracellular life. Crit. Rev. Microbiol. 25, 39 - 79.

Corsaro, D. et al., 2001. A new chlamydia-like 16S rRNA sequence from a clinical sample. Microbiology 147, 515 - 516.

Cousineau, B., C. Cerpa. J. Lefebrve, and R. Cedergren, (1992). The sequence of the gene encoding elongation factor Tu from Chlamydia trachomatis compared with those from other organisms. Gene 120, 33 - 41.

Dale, C., et al., (2001). The insect endosymbiont Sodalis glossinidium utilizes a type Ill secretion system for cell division. Proc. Nat. Acad. Sci. U. S. A. 98, 1883 - 1888. Full article [Acrobat]

Darville, T., (2000). Chlamydia spp. p. 229-262. In: Nataro, J. P., M. J. Blaser, and S. Cunningham-Rundles, Editors. Persistent bacterial infections. ASM Press, Washington, D C.

Deckert, G. et al., (1998). The complete genome of the hyper-thermophilic bacterium Aquifex aeolius. Nature 392, 353 - 358.

delVecchio, V. G et al., (2002) The genome sequence of the facultative intracellular pathogen Brucella melitensis. Proc. Nat. Acad. Sci. U. S. A. 99, 443 - 448.

deVilliers, E. P. et al., (2000). Genome size and genetic map of Cowdria ruminantium. Microbiology 146, 2627 - 2634. Full article [Acrobat]

Dilbeck, P. M., et al., (1990). Isolation of a previously undescribed rickettsia from an aborted bovine fetus. J. Clin. Microbiol. 28, 814 -816.

Doolittle, R. F. et al., (1996). Determining divergence times of the major kingdoms of living organisms with a molecular clock. Science 271, 470 - 476.

Durnler, E. J. et al., (2001). Reorganization of genera in the families Rickettsiaceae and Anaplasmataceae in the order Rickettsiales: unification of some species of Ehrlichia with Anaplasma, Cowdria with Ehrlichia, and Ehrlichia with Neorickettsiae: descriptions of five new species combinations; and designation of Ehrlichia equi and "HGE agent' as subjective synonyms of Ehrlichia phagocytophila. Int J. Syst. Evol. Bacteriol. In press.

Du, Y., G. McLaughlin, and K.-P. Chang, (1994). 16S Ribosomal DNA sequence identities of beta- proteobacterial endosymbionts in three Crithidia species. J. Bacteriol. 176, 3081 - 3084.

Dworkin, M, (1997). Multiculturism versus the single microbe. p.3-13. In J. A. Shapiro and M. Dworkin, Editors. Bacteria as multicellular organisms. Oxford University Press, New York, NY.

Eisen, J. A., (1995). The recA protein as a model molecule for molecular systematic studies of bacteria. Comparison of trees of RecAs amd 16S rRNAs from the same species. J Mol. Evol. 41, 1105 - 1123.

Emelyanov, V.M., (2001). Evolutionary relationship of rickettsiae and mitochondria. FEBS Letters 501, 11 - 18.

Erickson, H. P., (2000). Dynamin and FtsZ: missing links in mitochondrial and bacterial division. J. Cell Biol. 148, 1103 - 1105.Full article [Acrobat]

Essig, A., et al., Infection of Acanthamoeba castellani by Chlamydia pneumoniae. Appl. Environ. Microbiol. 63, 1396 - 1399. Full article [Acrobat]

Everett, K. D. (2000). Chlamydia and Chlamydiales: more than meets the eye. Vet Microbiol. 75, 100-126.

Everett. K. D. E., R. M. Bush, and A. A. Andersen, (1999). Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for identification of organisms. Int. J. Syst. Evol. Microbiol. 49, 415 - 440.

Fan, B. T., et al., (1998). Inhibition of apoptosis in chlamydia-infected cells: blockade of mitochondrial cytochrome c release and caspase activation. J. Exp. Med. 187, 487 - 496. Full article [Acrobat]

Fan, H., R. C. Brunham, and G. McClarty, (1992). Acquisition and synthesis of folates by obligate intracellular bacteria of the genus Chlamydia. J. Clin. Invest. 90, 1803 - 1811.

Feng, D.-F., G. Cho, and R.F. Doolittle, (1997). Determining divergence times with a protein clock: update and reevaluation. Proc. Nat. Acad. Sci. U. S. A. 94, 13028 - 13033. Full article [Acrobat]

Ferretti, J. J., et al., (2001). Complete genome sequence of an M1 strain of Streptococcus pyogenes. Proc. Nat. Acad. Sci. U. S. A. 98, 4658 - 4663. Full article [Acrobat]

Fields, K. K and T. Hackstadt, (2000). Evidence for the secretion of Chlamydia trachomatis CopN by a type Ill secretion mechanism. Mol. Microbiol. 38, 1048 - 1060.

Finlay, B. B., and S. Falkow, (1989). Common themes in microbial pathogenicity. Microbiol Rev. 53, 210 - 230.

Finlay, B. B., and S. Falkow, (1997). Common themes in microbial pathogenicity revisited. Microb. Mol. Biol. Rev. 61, 136 - 169. Full article [Acrobat]

Fleischmann, R. D., et al., (1995). Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496 - 512.

Fraser, C. M., et al., (1997). Genomic sequence of a Lyme disease spirochaete, Borrellia burgdorferi. Nature 390, 580 - 586.

Fraser, C. M., et al., (1998). Complete genome sequence of Treponema pallidum, the syphilis spirochete. Science 281, 375 - 388.

Fritsche, T. R., et al., (1999). In situ detection of novel bacterial endosymbionts of Acanthamoeba spp. phylogenetically related to members of the order Rickettsiales. Appl. Environ. Microbiol. 65, 206 - 212. Full article [Acrobat]

Fritsche, T. R., et al., (2000). Phylogenetic diversity among geographically dispersed Chlamydiales endosymbionts recovered from clinical and environmental isolates of Acanthamoeba spp. Appl. Environ. Microbiol. 66, 2613 - 2619. Full article [Acrobat]

Funk, D. I, et al., (2000). Intraspecific phylogenetic congruence among multiple symbiont genes. Proc. Roy. Soc. London Series B. 267, 2517 - 2251.

Galan, J. E., and Collmer, A. (1999). Type Ill secretion machines: bacterial devices for protein delivery into host cells. Science 284, 1322 -1328.

Geisler, W. M., et al., (2001). Epidemiology and clinical manifestations of unique Chlamydia trachomatis isolates that occupy nonfusogenic inclusions. J. Infect. Dis. 184, 879 - 884.

Gerard, H. C., et al., (2001). Expression of Chlamydia trachomatis genes encoding products required for DNA synthesis and cell division during active versus persistent infection. Mol. Microbiol. 41, 731 - 741.

Ghuysen, J.-M., and C. Goffin, (1999). Lack of cell wall peptidoglycan versus penicillin sensitivity: new insight into the chlamydial anomaly. Antimicrobial Agents Chemotherapy 43, 2339 - 2344. Full article [Acrobat]

Gilson, P. R., and P. L. Beech (2001). Cell division protein FtsZ: running rings around bacteria, chloroplasts, and mitochondria. Res. Microbiol. 152, 3 - 10.

Glaser, P., et al., (2001). Comparative genomics of Listeria species. Science 294, 849 - 852.

Glass, J. I., et al., (2000). The complete sequence of the mucosal pathogen Ureaplasma urealyticum. Nature 407, 757 - 762.

Goebel, W., and R. Gross (2001). Intracellular survival strategies of mutualistic and parasitic prokaryotes. Trends in Microbiol. 9, 267 - 273. Full article (Biomednet)

Goetz, W et al., (2001). Microinjection and growth of bacteria in the cytosol of mammalian cells. Proc. Nat. Acad. Sci. U. S. A. 98, 12221 - 12226. Full article [Acrobat]

Gray, M. W. 1992. The endosymbiont hypothesis revisited. Int. Rev. Cyt. 141, 233 - 333.

Green, J. M., B. P. Nichols, and R. G. Matthews (1996). Folate biosynthesis, reduction, and polyglutamylation. p. 665-673. In F. M. Neidhardt, Editor. Escherichia coli and Salmonella. ASM Press, Washington, D. C.

Gruber, T. M., and D. A.Bryant (1997). Molecular systematic studies of Eubacteria, using sigma70-type sigma factors of group 1 and group 2. J. Bacteriol. 179, 1734 - 1737. Full article [Acrobat]

Gupta, R. S, (1995). Evolution of the chaperonin families (Hsp60, Hsp10 and Tcp-1) of proteins and the origin of eukaryotic cells. Mol. Microbiol. 15, 1 - 11.

Hackstadt. T., (1999). Cell biology. p.139-170. In R.S. Stephens, Editor. Chlamydia. Intracellular biology, pathogenesis, and immunity. ASM Press, Washington, D. C.

Harb, O.S., L.Y. Gao, and Y. A. Kwak, (2000). From protozoa to mammalian cells: a new paradigm in the life cycle of intracellular bacterial pathogens. Environ. Microbiol. 2, 251 - 265.

Hatch, T. P., (1975). Competition between Chlamydia psittaci and L cells for host isoleucine pools: a limiting factor in chlamydial multiplication. Infect. Immun. 12, 211 - 220.

Hatch, T. P., E. AI-Hossainy, and J. A. Silverman., (1982). Adenine nucleotide and lysine transport in Chlamydia psittaci. J. Bacteriol. 150, 662 - 670.

Hatch, T. P., (1999). Developmental biology. p.101-138. In R. S. Stephens, Editor. Chlamydia. Intracellular biology, pathogenesis, and immunity. ASM Press, Washington, D. C.

Heidelberg, J. F., et al., (2000). DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 406, 469 - 470.

Heinzen, R. & T. Hackstadt, and J. E. Samuel., (1999). Developmental biology of Coxiella burnettii. Trends in Microbiol. 7, 149 - 154. Full article (Biomednet)

Henning, K., Schares, G., Granzow, H., Polster, U., Hartmann, M., Hotzel, H., Sachse, K., Peters, M. & Rauser M (2002). Neospora caninum and Waddlia chondrophila strain 2032/99 in a septic stillborn calf. Vet Microbiol. 2002 Mar 22;85(3):285-292.

Hilleman, M. R., (1945). Immunological studies on the psittacosis-lymphogranuloma venereum group of viral agents. J. Infect. Dis.76, 96 - 114.

Himmelreich, R., et al., (1996). Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res. 24, 4420 - 4449. Full article [Acrobat]

Hitchins, G. H., (1962). The utilization of biochemical differences between host and parasite as a basis for chemotherapy. p. 196-210. In L. G. Goodwin and R. H. Nimmo-Smith, Editors. Drugs, parasites, and hosts. Little, Brown and Company, Boston, MA

Hoffman, J. A., et al., (1999). Phylogenetic perspectives in innate immunity. Science 284, 1313 - 1318.

Horn, M., et al., (2000). Neochlamydia hartmanellae gen. nov., sp. nov. (Parachlamydiaceae), an endoparsite of the amoeba Hartmanella vermiformis. Microbiology 146,1231 - 1239. Full article 

Hotzel, H., et al., (2001). Genetic characterization of a Chlamydophila pneumoniae isolate from an African frog and comparison to currently accepted biovars. Syst. Appl. Microbiol. 24, 63 - 66.

Hsia, R.-C., et al., (1997). Type Ill secretion genes identify a putative virulence locus of Chlamydia. Mol. Microbiol. 25, 351 - 359.

Hueck, C. J., (1998). Type Ill protein secretion systems in bacterial pathogens of animals and plants. Microbiol. Mol. Biol. Rev. 62, 379 - 433. Full article  [Acrobat]

Huennekens, F. M., K. S. Vitols, and G. B. Henderson., (1978). Transport of folate compounds in bacterial and mammalian cells. p. 313-346. In A. Meister, Editor. Advances in enzymology and related areas of molecular biology. John Wiley & Sons, New York, NY

Huisman, G. W., et al., (1996). Morphological and physiological changes during stationary phase. p. 1672-1682. In Neidhardt, F. C., Editor. Escherichia coli and Salmonella. Second edition. ASM Press, Washington D. C.

Hutchison, C. A. Ill., (1999). Global transposon mutagenesis and a minimal mycoplasma genome. Science 286, 2165 - 2169.

Jacob, F, 1977. Evolution and tinkering. Science 196, 1161 - 1166.

Jongejan, F, et al., (1991). The tick-borne rickettsia Cowdria ruminantium has a Chlamydia-like developmental cycle. Onderstepoort J. Vet. Res. 58, 227 - 237.

Jordan, I.K., Kondrashov, F.A., Rogozin, I.B., Tatusov, R.L., Wolf, Y.I. & Koonin E. V. (2001). Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins. Genome Biol. 2(12):RESEARCH0053 Full article [Acrobat]

Kahane, S., et al., (1993). Description and partial characterization of a new chlamydia-like organism. FEMS Microbiol. Letters 109, 329 - 334.

Kahane, S., E. Metzer, and M. G. Friedman, (1995). Evidence that the novel microorganism "Z" may belong to a new genus in the family Chlamydiaceae. FEMS Microbiol. Letters 126, 203 - 208.

Kahane, S., et al., (1999). Simkania negevensis strain ZT: growth, antigenic and genome characteristics. Int. J. Syst. Bacteriol. 49, 815 - 820. 

Kaiser, D., (1993). Ronald Thaxter's legacy and the origins of multicellular development. Genetics 135, 249 - 254.

Kalman, S., et al., (1999). Comparative genetics of Chlamydia pneumoniae and C. trachomatis. Nature Genetics 389, 385 - 389.

Kaneko, T., and S. Tabata., (1997). Complete genome structure of the unicellular cyanobacterium Synechocystis sp. PCC6803. Plant Cell. Physiol. 38, 1171 - 1176.

Kang, D., et al., (1998). A peptidoglycan recognition protein in innate immunity conserved from insects to humans. Proc. Nat. Acad. Sci. U. S. A. 95, 10078 - 10082. Full article [Acrobat]

Kaprelyants, A. S., J. C. Gottschal, and D. B. Kell, (1993). Dormancy in non-sporulating bacteria. FEMS Microbiol. Rev. 104, 271 – 286.

Remaining references M - Z

 


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